chore: Major documentation cleanup - remove 2,060 obsolete files
BREAKING: Removes 746,569 lines of outdated documentation from root folder
## Summary
- Deleted 2,060 report/documentation files from root folder
- Kept only essential files: README.md, CLAUDE.md
- Updated .gitignore and config/tarpaulin.toml
- Reorganized config files into config/ directory
## Removed Content Categories
- Agent reports (AGENT_*.md, AGENT*.txt)
- Wave reports (WAVE_*.md, DQN_*.md)
- Implementation summaries
- Quick references and summaries
- Test reports and validation docs
- Deployment scripts (obsolete .sh files)
- Legacy config files and logs
## Preserved
- README.md - Main project documentation
- CLAUDE.md - Claude Code configuration
- docs/archive/ - Historical files for reference
- docs/ folder - Current documentation
- All source code unchanged
🐝 Hive Mind Collective Intelligence Cleanup
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
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